CDS
| Accession Number | TCMCG017C10541 |
| gbkey | CDS |
| Protein Id | OMP00856.1 |
| Location | join(62539..64128,68109..69144,70039..70271) |
| GeneID | InterPro:IPR005162 |
| Organism | Corchorus olitorius |
| locus_tag | COLO4_12314 |
Protein
| Length | 952aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA215141, BioSample:SAMN03160584 |
| db_source | AWUE01014901.1 |
| Definition | Retrotransposon gag protein [Corchorus olitorius] |
| Locus_tag | COLO4_12314 |
EGGNOG-MAPPER Annotation
| COG_category | - |
| Description | - |
| KEGG_TC | - |
| KEGG_Module | - |
| KEGG_Reaction | - |
| KEGG_rclass | - |
| BRITE | - |
| KEGG_ko | - |
| EC | - |
| KEGG_Pathway | - |
| GOs |
GO:0008150
[VIEW IN EMBL-EBI] GO:0009893 [VIEW IN EMBL-EBI] GO:0010604 [VIEW IN EMBL-EBI] GO:0019219 [VIEW IN EMBL-EBI] GO:0019222 [VIEW IN EMBL-EBI] GO:0031323 [VIEW IN EMBL-EBI] GO:0031325 [VIEW IN EMBL-EBI] GO:0045935 [VIEW IN EMBL-EBI] GO:0048518 [VIEW IN EMBL-EBI] GO:0048522 [VIEW IN EMBL-EBI] GO:0050789 [VIEW IN EMBL-EBI] GO:0050794 [VIEW IN EMBL-EBI] GO:0051052 [VIEW IN EMBL-EBI] GO:0051054 [VIEW IN EMBL-EBI] GO:0051171 [VIEW IN EMBL-EBI] GO:0051173 [VIEW IN EMBL-EBI] GO:0060255 [VIEW IN EMBL-EBI] GO:0065007 [VIEW IN EMBL-EBI] GO:0080090 [VIEW IN EMBL-EBI] GO:1901535 [VIEW IN EMBL-EBI] GO:1901537 [VIEW IN EMBL-EBI] |
Sequence
| CDS: ATGGCAGATGGAGTGCAAACCCGATTGCAAAAAGAAGTCTCCACCTTACAGAAGGAAGTCCAACGTATTGATGCGAGTATTGAACAAAATCGCTCTGAGATTCGTGCTAGCGTGGAAGCCATGGGGACTGAGATGCGACAGATGTTTGAGAAACTCATGTTCAAAATTGATTCCAACATCACTGCCACGAACCTCATAGAGCCTTCGGGTTCGACGGAGCCTCGGCCTATAATTGCTAGTGATGAGAAATCTTTCACTAAGCATACTAAACTTCAATGCCCACGATTTAATGGCGATGATTTCCTTGGGTGGAAATTGAAAGTTGAGCAGTTTTTTGCAGCAGATAATACCGAGGACAAGCATAAGGTTCTCATTGCTATGATGCACTTGGATGGGAGAGCACTTCAATGGCACCAAAGATTCATGCGAGACAAAGGCTCCCTACAGGAGGTAACCTGGAATCAATATTTACTTTCCTTACGAGCTAGATTTTGTGATACTGAATTTACAGATCCATTCTCCGTCTTGGTTGCTCACAAACACACAAATACCGTTGAGGAGTACTTTGAGGAGTTTGAAAGCTTGCTTAGTCTGGTTGATATCTCGGAGGACCAAGCCCTGGGCATCTTTATCAGTAACTTAAAACCTGAGGTTGAACAGAGGATTCGACTCTTTTACCCAAAAACCTTAAACCATGCTTTCAACCTTGCTAAACAGGTTGAAGTCATGATTTTTAATCTCCCCAGGAAACCAAACTTACCCTATAAACAATATACATCATCAGCTTTATCAAACCTAACACCTATTTCCACCATTCCCACACCTTTACCAGCTCTTTTGCCTGCACCCCAAAACACAAAACCTACCATAACCTTCACTAAACACAACAGAACACCAAACACTACAACTACAACTAAGAACCCACCACTTTTACACCGAACCCCAAACGCAAGAGCACCTACTAGGGAAGAAAGGGATGAACGCCGCAAAAGGGGCCTATGTATGTGGTGTGGCATCAAGTATTCTCCTGGCCACAGTTGTGTTCGATCTAACCTATTCAGTATTCTCCAAGCAGATCCAGAGGACACTGTTCCTGAGCTTGATAATTGTACTGAGGTCACACAGGCTGAAATATCAGCTATTGAAGCCACTTTAGACCCTATTCTCTCTCTCCATGCTATTTTGGGTACCTCTGATCATCAAACTATGTGTATTATTGGCACCATCAAACATCAGGAGGTGATCATTTTGATAGATTCGGGTAGCTCTCATAACTTTATGGATAAAGCAACTGCTAAAAGAATTGGTTGGAAAACTCACCAGATTACTGGAGTGGGGGTTAAAGTTGCAAACGGTCATCAACTTTGGGCAAAGGATATCTGTTATGAAGTACCATGGGAAGCTCAAGGTTTGATCCAGTGCACCACCTTTATGCTTCTTCCCTTATCTGGCTGTGATATAGTTCTCGGGGTTGAGTGGTTGGTCACACTTGGACCGATTCTTTGGGACTTCTCCAAACTCACAATGCAATTCCATATTGCTCAAATTCAACACTGCTTGAAGGGTTTACAGGCTGGTTCTATCCAATTGGTACTTTCTAAGAGGGATTGGGTTTCGAGAGAAGCTGAGACTCGCAACGTGAATTTTCGCGGTATACATAATGACTCCAAGGCTCTGACTATAATACCATCCGCTGATCAGTATTTTTTGCTTAACTTCATTATGAGCAATTACTTGGGCCCTGATGTCTACTCTGATAACCCAAGGCATTCAGCTTCACAAAGATTGGCGCAAGGTTTGCCACCATATACTTCAAAAAATCTGGGTTCTTCATTTGTTAGCACTTCTCAGTTAGAGAGCTTGTATTACTATGTCCTGAGGGACACTCATCCGGGGCTGGTTCTCGAACCAAGCATGCTGCATTCATATCTGGAAGGTAACTTACCAGTGCCAAGCTCAGAGCTATTAGAGGACTGTCAGAAGTTCACAAGTTTTTTCCCACCAAATATTCATGAACGTAAAAGATACTCGGAAAACAATGTGATTGTCAAAGGAGTTGTTCTTATTGATGATCCAGATACATCTCACATGAAGGAAGATCATGAAAGGTTCAAAAACTTAACTGGTTTAGCTGATTTTAAGATTGACAAACTCAAATCTTTATCATATGAACATGGATACCTCAAAAGTAAAGAAGATGATGATCAAAACAGTATGAAAGCTAGTGAGGAGAGAATTTCTGGATGTGTCACCAATGGAAATGGCATTGCATCAGCAAGTATTCAAGAAAACAATGGAAAGCACCAGTTCGACTCTCTACCAACTTCAGCAATTTCCCCTGTCATGTCCTTGTTAAAACATATCAGTGAGGGAGCATCCAAGAGAACCTATGAAAGGGATGGACCTGCCATGATGCCCCTTCTAGCTGTTCCAAATGTGGATCAATGTATTTCAGATGTGTCCATTATTTTAAATGGGACTGCCAAGAAGGGGATAGCTGGACCACAAATTGGTGTTTTGGACATTGGGGTCAGCAAAGTTGCATACTTTTTCCGAGTTGCTATGCCTGGAGTTAGGAAGGATTATTGTATGTTTCTCTTCTTCTCAGTTTTTAAATATTATTCTGGTGAGTTCAGTTGTGAGATTGAGTCTAACGGAACAGTTCATATCCAAGGATCAACCTCTGGTGGAGGGACTATCAAGAAGCGCTCCCGTGTTTTCCATATGACATTCCAGCAATTGTGCCCAGCCGGAGCTTTTGCGATGTCATTCAGTCTTCCAGGACCCGTTGATCCAAGGCTGTTCTCACCTAACTTTAGGTCCGATGGCATTTTTGAAGCTGTTGTGATTAAACAATGA |
| Protein: MADGVQTRLQKEVSTLQKEVQRIDASIEQNRSEIRASVEAMGTEMRQMFEKLMFKIDSNITATNLIEPSGSTEPRPIIASDEKSFTKHTKLQCPRFNGDDFLGWKLKVEQFFAADNTEDKHKVLIAMMHLDGRALQWHQRFMRDKGSLQEVTWNQYLLSLRARFCDTEFTDPFSVLVAHKHTNTVEEYFEEFESLLSLVDISEDQALGIFISNLKPEVEQRIRLFYPKTLNHAFNLAKQVEVMIFNLPRKPNLPYKQYTSSALSNLTPISTIPTPLPALLPAPQNTKPTITFTKHNRTPNTTTTTKNPPLLHRTPNARAPTREERDERRKRGLCMWCGIKYSPGHSCVRSNLFSILQADPEDTVPELDNCTEVTQAEISAIEATLDPILSLHAILGTSDHQTMCIIGTIKHQEVIILIDSGSSHNFMDKATAKRIGWKTHQITGVGVKVANGHQLWAKDICYEVPWEAQGLIQCTTFMLLPLSGCDIVLGVEWLVTLGPILWDFSKLTMQFHIAQIQHCLKGLQAGSIQLVLSKRDWVSREAETRNVNFRGIHNDSKALTIIPSADQYFLLNFIMSNYLGPDVYSDNPRHSASQRLAQGLPPYTSKNLGSSFVSTSQLESLYYYVLRDTHPGLVLEPSMLHSYLEGNLPVPSSELLEDCQKFTSFFPPNIHERKRYSENNVIVKGVVLIDDPDTSHMKEDHERFKNLTGLADFKIDKLKSLSYEHGYLKSKEDDDQNSMKASEERISGCVTNGNGIASASIQENNGKHQFDSLPTSAISPVMSLLKHISEGASKRTYERDGPAMMPLLAVPNVDQCISDVSIILNGTAKKGIAGPQIGVLDIGVSKVAYFFRVAMPGVRKDYCMFLFFSVFKYYSGEFSCEIESNGTVHIQGSTSGGGTIKKRSRVFHMTFQQLCPAGAFAMSFSLPGPVDPRLFSPNFRSDGIFEAVVIKQ |